• Stanford University
  • University of Rochester

Aashay Mardikar

Biochemist interested in how molecular mechanisms of disease inform drug discovery, clinical questions, and the broader systems of care. I recently graduated from the University of Rochester (Biochemistry) and will begin MD-PhD training in the Stanford Medical Scientist Training Program in Aug 2026.

Current Focus

My work centers on three linked questions: how molecular mechanisms of disease are uncovered, how those mechanisms can be translated into therapeutics and tools, and how ethical and policy decisions shape which interventions ultimately reach patients.

If you're thinking about research, MD-PhD training, or adjacent questions in science and medicine, I'm always glad to connect!

About

I'm a biochemist beginning MD-PhD training in the Stanford Medical Scientist Training Program. My work has lived in three overlapping spaces: the molecular mechanisms of human disease — most recently RNA biology and tRNA modification in the Fu Lab, previously antimicrobial resistance in the Dunman Lab; the translation of those mechanisms toward clinical impact — through both wet-lab research and VAPGuard, a medical device venture; and the ethics and policy of drug discovery — particularly how antimicrobials, and broadly all medicines, reach patients, in collaboration with the Department of Philosophy at URochester.

Teaching and mentorship are part of how I think about that work. I co-founded and continue to develop Qubix, an exam-review platform now used by 500+ students across STEM courses at URochester.

When I'm not in the lab, I love playing the violin and piano in chamber ensembles and orchestras. You can also find me cooking, reading, or at the driving range.

Training Path

Stanford logo

Stanford University

Stanford, CA

Beginning Aug 2026

University of Rochester shield University of Rochester shield

University of Rochester

Rochester, NY

May 2026

Research

Fu Lab, URochester

Studied how disease-associated METTL2 variants disrupt tRNA modification and what that reveals about RNA biology in human pathology. Supported by the Beckman Scholars Program, I biochemically characterized the binding and functional properties of the METTL2 complex and its variants.

Dunman Lab, URMC

Focused on antimicrobial discovery against MRSA by identifying small-molecule inhibitors of penicillin-binding protein 4. I optimized and performed a high-throughput screen of 28,000 compounds as candidate inhibitors.

Clinical Trial Ethics, URochester

Examined when clinical trials for potential antibiotics are ethically justified, especially under conditions of uncertainty and unmet need. Supported by the Meliora Scholars Program, I worked with Dr. Richard Dees on the ethics of antimicrobial clinical trials.

Publications & Presentations

† corresponding author

  1. In Press Mardikar, A.† (2026). Anticipatory Antibiotics as Preventive Medicine: The Ethics of Proactive Clinical Trials. JME Practical Bioethics.
  2. Mardikar, A.†, Ramanan, S., Stephen, M., Graham, R. J., & Gunturi, A. (2025). The promise of blue light in combating ventilator-associated pneumonia. Expert Review of Respiratory Medicine, 20(5), 501–511. doi.org/10.1080/17476348.2025.2587311
  3. Gondil, V. S., Butman, H. S., Young, M., Walsh, D. J., Narkhede, Y., Zeiler, M. J., Crow, A. H., Carpenter, M. E., Mardikar, A., Melander, R. J., Wiest, O.†, Dunman, P. M.†, & Melander, C.† (2024). Development of phenylurea-based small molecules that target penicillin-binding protein 4. Chemical Biology & Drug Design, 103(6), e14569. doi.org/10.1111/cbdd.14569
  4. Senanayaka, D., Zeng, D., Deniz, E., Priyankara, I. K., Helmbreck, J., Schneider, O., Mardikar, A., Uren, A., & Reiter, N. J.† (2024). Anticancer drugs of Lysine Specific Histone Demethylase-1 (LSD1) display variable inhibition on nucleosome substrates. Biochemistry, 63(11), 1369–1375. doi.org/10.1021/acs.biochem.4c00090
  5. Slick, R. A., Sutton, J., Haberman, M., O'Brien, B. S., Tinklenberg, J. A., Mardikar, A., Prom, M. J., Beatka, M., Gartz, M., Vanden Avond, M. A., Siebers, E., Mack, D. L., Gonzalez, J. P., Ebert, A. D., Nagaraju, K., & Lawlor, M. W.† (2024). High mobility group box 1 (HMGB1) is a potential disease biomarker in cell and mouse models of Duchenne muscular dystrophy. Biology Open, 13(9), bio060542. doi.org/10.1242/bio.060542

Presentations

Oral

  • Mardikar, A., Berger, K. D., & Fu, D. Impaired Assembly and Catalysis of a tRNA 3-Methylcytosine Modification Complex Caused by Neurodevelopmental Disorder-Associated METTL2 Variants. Goldwater Summit, Houston, TX. Oct 2025.

Selected Posters

  • Annual Beckman Symposium, Irvine, CA. Aug 2025.
  • 30th Annual Meeting of the RNA Society, San Diego, CA. May 2025.
  • AAP/ASCI/APSA Joint Meeting, Chicago, IL. Apr 2025.
  • AAP/ASCI/APSA Joint Meeting, Chicago, IL. Apr 2024.
  • Southeastern Medical Scientist Symposium, Emory University School of Medicine, Atlanta, GA. Nov 2023.
  • The 33rd Annual Buffalo Conference on Microbial Pathogenesis, Buffalo, NY, May 2023.

Translation & Initiatives

Qubix

Qubix is an online platform that allows students to rapidly and flexibly search through thousands of questions previously offered by their professor, for their course. Qubix grew out of my interest in how students learn difficult scientific material and how feedback can be made more useful at scale. Developed with faculty and the URochester web-applications team, the platform is now used by 1000+ students across multiple STEM courses. I continue to lead development and the Qubix TA team as it expands into new courses, with usage correlating significantly with improved exam outcomes in classes that adopt it.

VAPGuard

VAPGuard is a medical device startup aimed at reducing rates of ventilator-associated infections. VAPGuard grew out of an interest in translating microbiology and mechanistic thinking into preventive tools for patient care. As co-founder and CEO, I advanced the venture through NSF I-Corps, Launch NY mentorship, and prototype testing with the URMC Department of Microbiology & Immunology in collaboration with Dr. Timothy M. Baran. The work also resulted in a scholarly published review in Expert Review of Respiratory Medicine on blue light technologies and VAP prevention, alongside the regional and national recognition listed below.

Honors & Awards

National

  • Dec 2025
    Churchill Scholarship Alternate

    One of four U.S. alternates for postgraduate study at the University of Cambridge.

  • Oct 2025
    Rhodes Scholarship Finalist

    Finalist for postgraduate study at the University of Oxford.

  • Mar 2025
    Goldwater Scholar

    National scholarship recognizing undergraduate excellence in STEM research.

  • May 2024
    Beckman Scholar

    Two-year, $26,000 research fellowship from the Arnold and Mabel Beckman Foundation.

Campus

  • Apr 2025
    Phi Beta Kappa — Junior Elect

    1 of 11 juniors elected from a class of 1,500+.

  • Nov 2023
    Phi Beta Kappa Suzanne J. O'Brien Book Award

    1 of 15 students recognized for distinguished early scholarship.

  • Mar 2022
    Whipple Science and Research Scholarship

    URochester scholarship awarded to incoming students with strong research potential.

Grants, Travel Awards & Pitch Competitions

  • Oct 2025
    Outstanding Presentation Award

    For a presentation on METTL2 variants at the Goldwater Summit, Rice University.

  • Jun 2025
    RNA Society Poster Prize

    Poster prize awarded at the 30th Annual Meeting of the RNA Society.

  • Apr 2025
    AAP/ASCI/APSA Joint Meeting Travel Award

    Travel award supporting attendance at the joint physician-scientist meeting in Chicago.

  • Apr 2025 VAPGuard logo
    New York Business Plan Competition — 2nd Prize

    Second prize in New York's statewide student venture competition.

  • Mar 2025 Qubix logo
    Teaching Innovation Grant

    URochester grant supporting expansion of the Qubix platform.

  • Jan 2025 Qubix logo
    Educational IT Innovation Grant

    University IT funding to expand Qubix infrastructure.

  • Jun 2024 VAPGuard logo
    Hult Prize Summits Global Finalist

    Global finalist, top 40 of 10,000+ teams in the Hult Prize competition.

  • May 2024 VAPGuard logo
    Mark Ain Business Model Competition — 1st Prize

    First prize in URochester's flagship business model competition.

  • Apr 2024 VAPGuard logo
    New York Business Plan Competition — 2nd Prize

    Second prize in New York's statewide student venture competition.

  • Nov 2023 VAPGuard logo
    Patient Safety & Technology Challenge — Grand Prize

    Grand prize for a student-led patient-safety technology venture.

  • May 2023
    Meliora Scholar

    URochester support for independent humanities research.

Service & Teaching

Professional Service

  • Dean of Libraries National Search Committee

    Appointed by the Provost to represent undergraduates in a national search for the Dean of Libraries; served alongside University leadership, faculty, and trustees.

  • Peer Reviewer

Teaching & Mentorship

  • Advanced Laboratory Grader URochester Dept. of Biochemistry & Biophysics · Jan – May 2025
  • Workshop Leader URochester Dept. of Chemistry · Aug 2023 – Dec 2024
  • Tutor URochester Learning Center · Oct 2023 – Dec 2025