Aashay Mardikar
Biochemist interested in how molecular mechanisms of disease inform drug discovery, clinical questions, and the broader systems of care. I recently graduated from the University of Rochester (Biochemistry) and will begin MD-PhD training in the Stanford Medical Scientist Training Program in Aug 2026.
Current Focus
My work centers on three linked questions: how molecular mechanisms of disease are uncovered, how those mechanisms can be translated into therapeutics and tools, and how ethical and policy decisions shape which interventions ultimately reach patients.
If you're thinking about research, MD-PhD training, or adjacent questions in science and medicine, I'm always glad to connect!
Overview
About
I'm a biochemist beginning MD-PhD training in the Stanford Medical Scientist Training Program. My work has lived in three overlapping spaces: the molecular mechanisms of human disease — most recently RNA biology and tRNA modification in the Fu Lab, previously antimicrobial resistance in the Dunman Lab; the translation of those mechanisms toward clinical impact — through both wet-lab research and VAPGuard, a medical device venture; and the ethics and policy of drug discovery — particularly how antimicrobials, and broadly all medicines, reach patients, in collaboration with the Department of Philosophy at URochester.
Teaching and mentorship are part of how I think about that work. I co-founded and continue to develop Qubix, an exam-review platform now used by 500+ students across STEM courses at URochester.
When I'm not in the lab, I love playing the violin and piano in chamber ensembles and orchestras. You can also find me cooking, reading, or at the driving range.
Education
Training Path
Stanford University
Stanford, CA
Beginning Aug 2026
University of Rochester
Rochester, NY
May 2026
Inquiry
Research
Fu Lab, URochester
Studied how disease-associated METTL2 variants disrupt tRNA modification and what that reveals about RNA biology in human pathology. Supported by the Beckman Scholars Program, I biochemically characterized the binding and functional properties of the METTL2 complex and its variants.
Dunman Lab, URMC
Focused on antimicrobial discovery against MRSA by identifying small-molecule inhibitors of penicillin-binding protein 4. I optimized and performed a high-throughput screen of 28,000 compounds as candidate inhibitors.
Clinical Trial Ethics, URochester
Examined when clinical trials for potential antibiotics are ethically justified, especially under conditions of uncertainty and unmet need. Supported by the Meliora Scholars Program, I worked with Dr. Richard Dees on the ethics of antimicrobial clinical trials.
Output
Publications & Presentations
† corresponding author
- In Press (2026). Anticipatory Antibiotics as Preventive Medicine: The Ethics of Proactive Clinical Trials. JME Practical Bioethics.
- , Ramanan, S., Stephen, M., Graham, R. J., & Gunturi, A. (2025). The promise of blue light in combating ventilator-associated pneumonia. Expert Review of Respiratory Medicine, 20(5), 501–511. doi.org/10.1080/17476348.2025.2587311
- Gondil, V. S., Butman, H. S., Young, M., Walsh, D. J., Narkhede, Y., Zeiler, M. J., Crow, A. H., Carpenter, M. E., , Melander, R. J., Wiest, O.†, Dunman, P. M.†, & Melander, C.† (2024). Development of phenylurea-based small molecules that target penicillin-binding protein 4. Chemical Biology & Drug Design, 103(6), e14569. doi.org/10.1111/cbdd.14569
- Senanayaka, D., Zeng, D., Deniz, E., Priyankara, I. K., Helmbreck, J., Schneider, O., , Uren, A., & Reiter, N. J.† (2024). Anticancer drugs of Lysine Specific Histone Demethylase-1 (LSD1) display variable inhibition on nucleosome substrates. Biochemistry, 63(11), 1369–1375. doi.org/10.1021/acs.biochem.4c00090
- Slick, R. A., Sutton, J., Haberman, M., O'Brien, B. S., Tinklenberg, J. A., , Prom, M. J., Beatka, M., Gartz, M., Vanden Avond, M. A., Siebers, E., Mack, D. L., Gonzalez, J. P., Ebert, A. D., Nagaraju, K., & Lawlor, M. W.† (2024). High mobility group box 1 (HMGB1) is a potential disease biomarker in cell and mouse models of Duchenne muscular dystrophy. Biology Open, 13(9), bio060542. doi.org/10.1242/bio.060542
Presentations
Oral
- Mardikar, A., Berger, K. D., & Fu, D. Impaired Assembly and Catalysis of a tRNA 3-Methylcytosine Modification Complex Caused by Neurodevelopmental Disorder-Associated METTL2 Variants. Goldwater Summit, Houston, TX. Oct 2025.
Selected Posters
- Annual Beckman Symposium, Irvine, CA. Aug 2025.
- 30th Annual Meeting of the RNA Society, San Diego, CA. May 2025.
- AAP/ASCI/APSA Joint Meeting, Chicago, IL. Apr 2025.
- AAP/ASCI/APSA Joint Meeting, Chicago, IL. Apr 2024.
- Southeastern Medical Scientist Symposium, Emory University School of Medicine, Atlanta, GA. Nov 2023.
- The 33rd Annual Buffalo Conference on Microbial Pathogenesis, Buffalo, NY, May 2023.
Translation
Translation & Initiatives
Qubix
Qubix is an online platform that allows students to rapidly and flexibly search through thousands of questions previously offered by their professor, for their course. Qubix grew out of my interest in how students learn difficult scientific material and how feedback can be made more useful at scale. Developed with faculty and the URochester web-applications team, the platform is now used by 1000+ students across multiple STEM courses. I continue to lead development and the Qubix TA team as it expands into new courses, with usage correlating significantly with improved exam outcomes in classes that adopt it.
VAPGuard
VAPGuard is a medical device startup aimed at reducing rates of ventilator-associated infections. VAPGuard grew out of an interest in translating microbiology and mechanistic thinking into preventive tools for patient care. As co-founder and CEO, I advanced the venture through NSF I-Corps, Launch NY mentorship, and prototype testing with the URMC Department of Microbiology & Immunology in collaboration with Dr. Timothy M. Baran. The work also resulted in a scholarly published review in Expert Review of Respiratory Medicine on blue light technologies and VAP prevention, alongside the regional and national recognition listed below.
Recognition
Honors & Awards
National
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Dec 2025
Churchill Scholarship Alternate
One of four U.S. alternates for postgraduate study at the University of Cambridge.
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Oct 2025
Rhodes Scholarship Finalist
Finalist for postgraduate study at the University of Oxford.
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Mar 2025
Goldwater Scholar
National scholarship recognizing undergraduate excellence in STEM research.
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May 2024
Beckman Scholar
Two-year, $26,000 research fellowship from the Arnold and Mabel Beckman Foundation.
Campus
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Apr 2025
Phi Beta Kappa — Junior Elect
1 of 11 juniors elected from a class of 1,500+.
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Nov 2023
Phi Beta Kappa Suzanne J. O'Brien Book Award
1 of 15 students recognized for distinguished early scholarship.
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Mar 2022
Whipple Science and Research Scholarship
URochester scholarship awarded to incoming students with strong research potential.
Grants, Travel Awards & Pitch Competitions
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Oct 2025
Outstanding Presentation Award
For a presentation on METTL2 variants at the Goldwater Summit, Rice University.
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Jun 2025
RNA Society Poster Prize
Poster prize awarded at the 30th Annual Meeting of the RNA Society.
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Apr 2025
AAP/ASCI/APSA Joint Meeting Travel Award
Travel award supporting attendance at the joint physician-scientist meeting in Chicago.
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New York Business Plan Competition — 2nd Prize
Second prize in New York's statewide student venture competition.
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Teaching Innovation Grant
URochester grant supporting expansion of the Qubix platform.
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Educational IT Innovation Grant
University IT funding to expand Qubix infrastructure.
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Hult Prize Summits Global Finalist
Global finalist, top 40 of 10,000+ teams in the Hult Prize competition.
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Mark Ain Business Model Competition — 1st Prize
First prize in URochester's flagship business model competition.
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New York Business Plan Competition — 2nd Prize
Second prize in New York's statewide student venture competition.
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Patient Safety & Technology Challenge — Grand Prize
Grand prize for a student-led patient-safety technology venture.
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May 2023
Meliora Scholar
URochester support for independent humanities research.
Beyond the Lab
Service & Teaching
Professional Service
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Dean of Libraries National Search Committee
Appointed by the Provost to represent undergraduates in a national search for the Dean of Libraries; served alongside University leadership, faculty, and trustees.
- Peer Reviewer
Teaching & Mentorship
- Advanced Laboratory Grader URochester Dept. of Biochemistry & Biophysics · Jan – May 2025
- Workshop Leader URochester Dept. of Chemistry · Aug 2023 – Dec 2024
- Tutor URochester Learning Center · Oct 2023 – Dec 2025